Variant report

Variant	rs4659395
Chromosome Location	chr1:26218265-26218266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:26186031..26187953-chr1:26217090..26219316,2	MCF-7	breast:
2	chr1:26144584..26148504-chr1:26213993..26219242,5	MCF-7	breast:
3	chr1:26153734..26156719-chr1:26216356..26218396,2	K562	blood:
4	chr1:26212750..26219919-chr1:26322810..26327399,10	K562	blood:
5	chr1:26217587..26219092-chr1:26220601..26223352,2	MCF-7	breast:
6	chr1:26218143..26237631-chr1:26312847..26343326,142	K562	blood:
7	chr1:26203993..26207196-chr1:26215838..26218866,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236528	Chromatin interaction
ENSG00000252691	Chromatin interaction
ENSG00000252190	Chromatin interaction
ENSG00000117640	Chromatin interaction
ENSG00000228172	Chromatin interaction
ENSG00000223474	Chromatin interaction
ENSG00000158006	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35020920	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993556	chr1:25695702-26267281	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv834491	chr1:26052902-26240608	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv834502	chr1:26160772-26313919	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv871062	chr1:26188625-26283961	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv945838	chr1:26213812-26218468	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:26201800-26219000	Weak transcription	Fetal Heart	heart
2	chr1:26202800-26220400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:26203000-26219200	Weak transcription	Right Atrium	heart
4	chr1:26203000-26222200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:26204200-26219000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:26206800-26219000	Strong transcription	Fetal Brain Female	brain
7	chr1:26207200-26219000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:26208200-26224600	Weak transcription	Spleen	Spleen
9	chr1:26210000-26222000	Strong transcription	Brain Germinal Matrix	brain
10	chr1:26211200-26221800	Strong transcription	Thymus	Thymus
11	chr1:26211400-26218600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:26212000-26219200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:26212000-26222200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:26212600-26222000	Weak transcription	Primary T cells from cord blood	blood
15	chr1:26212800-26223000	Enhancers	Placenta	Placenta
16	chr1:26213200-26219000	Weak transcription	Fetal Brain Male	brain
17	chr1:26213400-26221800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:26213600-26219000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:26214600-26218400	Enhancers	NHEK	skin
20	chr1:26214600-26220000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:26214600-26220200	Enhancers	Fetal Intestine Large	intestine
22	chr1:26214600-26221800	Strong transcription	Dnd41	blood
23	chr1:26214800-26220600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:26215000-26220000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:26215000-26220000	Enhancers	HMEC	breast
26	chr1:26215400-26220800	Enhancers	Ovary	ovary
27	chr1:26215600-26219000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:26215600-26221800	Weak transcription	Brain Angular Gyrus	brain
29	chr1:26215800-26218400	Enhancers	Pancreas	Pancrea
30	chr1:26215800-26218800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:26215800-26220200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:26215800-26220200	Genic enhancers	Fetal Muscle Leg	muscle
33	chr1:26215800-26220800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:26216000-26220000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:26216000-26220000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:26216000-26220000	Enhancers	Stomach Mucosa	stomach
37	chr1:26216000-26220200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr1:26216200-26219400	Enhancers	HepG2	liver
39	chr1:26216200-26220000	Enhancers	NH-A	brain
40	chr1:26216200-26220200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:26216200-26220600	Enhancers	NHLF	lung
42	chr1:26216200-26220800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:26216400-26219000	Enhancers	Fetal Intestine Small	intestine
44	chr1:26216400-26219000	Enhancers	Osteobl	bone
45	chr1:26216400-26220000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr1:26216400-26220200	Enhancers	NHDF-Ad	bronchial
47	chr1:26216600-26220400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:26216600-26231600	Weak transcription	Small Intestine	intestine
49	chr1:26216800-26219000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:26216800-26219400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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