Variant report

Variant	rs4661275
Chromosome Location	chr1:223679206-223679207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10907386	0.80[ASN][1000 genomes]
rs11261296	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12041055	0.80[ASN][1000 genomes]
rs12119648	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4233523	0.81[ASN][1000 genomes]
rs4325124	0.91[AMR][1000 genomes]
rs4511103	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4512641	0.81[ASN][1000 genomes]
rs4661276	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6692980	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223677400-223679800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:223678400-223681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:223679000-223685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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