Variant report

Variant	rs4663365
Chromosome Location	chr2:235143950-235143951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10204845	0.84[EUR][1000 genomes]
rs10929015	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10929018	0.86[EUR][1000 genomes]
rs1125060	0.84[EUR][1000 genomes]
rs11680199	0.83[EUR][1000 genomes]
rs12473718	0.83[EUR][1000 genomes]
rs2363987	0.89[EUR][1000 genomes]
rs35063896	0.84[EUR][1000 genomes]
rs35556505	0.84[EUR][1000 genomes]
rs4663116	0.98[ASN][1000 genomes]
rs4663366	0.95[ASN][1000 genomes]
rs6740447	0.95[ASN][1000 genomes]
rs7570313	0.83[EUR][1000 genomes]
rs951679	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235139200-235144600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:235143600-235144000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:235143600-235144000	Enhancers	Placenta	Placenta
4	chr2:235143800-235144200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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