Variant report

Variant	rs4664497
Chromosome Location	chr2:152542292-152542293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152540559..152543086-chr2:152704244..152707063,2	K562	blood:
2	chr2:152539206..152543340-chr2:152544613..152549104,5	K562	blood:
3	chr2:152542053..152544842-chr2:152548104..152550538,2	MCF-7	breast:
4	chr2:152520871..152523235-chr2:152540284..152542903,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10167462	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs10170273	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs10172692	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10178880	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs10193188	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1054883	0.94[CEU][hapmap]
rs10930723	0.82[EUR][1000 genomes]
rs10930740	0.97[EUR][1000 genomes]
rs10930777	0.87[EUR][1000 genomes]
rs11695661	1.00[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes]
rs12052828	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12328501	0.84[EUR][1000 genomes]
rs12464543	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12616767	0.94[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs12620077	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs12693090	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13015219	0.85[EUR][1000 genomes]
rs13032138	0.94[CEU][hapmap]
rs13404704	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs13428975	0.81[EUR][1000 genomes]
rs1357468	0.87[CEU][hapmap];0.85[JPT][hapmap]
rs1799	0.94[CEU][hapmap]
rs2344733	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs4077121	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs4077122	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs4273217	1.00[CEU][hapmap]
rs4274593	0.86[EUR][1000 genomes]
rs4289189	0.98[EUR][1000 genomes]
rs4309576	0.85[EUR][1000 genomes]
rs4349344	0.86[EUR][1000 genomes]
rs4355107	0.86[EUR][1000 genomes]
rs4374369	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4375863	0.96[EUR][1000 genomes]
rs4381781	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4413159	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes]
rs4425075	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4453694	0.81[ASN][1000 genomes]
rs4465763	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4508593	0.86[EUR][1000 genomes]
rs4508594	0.86[EUR][1000 genomes]
rs4536649	0.94[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs4564765	0.80[EUR][1000 genomes]
rs4564766	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4611637	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes]
rs4614931	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs4625904	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4664494	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4664501	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs4664502	0.87[EUR][1000 genomes]
rs5005569	0.85[ASN][1000 genomes]
rs6433566	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6433569	0.92[EUR][1000 genomes]
rs6433575	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6433603	0.85[EUR][1000 genomes]
rs6433606	0.85[EUR][1000 genomes]
rs6433610	0.86[EUR][1000 genomes]
rs6713162	0.94[CEU][hapmap]
rs6715755	0.95[EUR][1000 genomes]
rs6716286	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6723129	0.92[EUR][1000 genomes]
rs6729101	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs6730589	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes]
rs6733811	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs6733909	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6734148	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6735208	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747113	0.80[EUR][1000 genomes]
rs6760384	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs7426114	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7563441	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7564024	0.93[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs7564674	0.98[EUR][1000 genomes]
rs7596744	0.94[CEU][hapmap]
rs9287990	0.94[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152505200-152543600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:152514600-152542800	Strong transcription	HSMMtube	muscle
3	chr2:152529200-152550000	Weak transcription	Aorta	Aorta
4	chr2:152532800-152542400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr2:152532800-152542400	Strong transcription	Fetal Muscle Leg	muscle
6	chr2:152533800-152544600	Weak transcription	Pancreas	Pancrea
7	chr2:152539400-152544800	Weak transcription	K562	blood
8	chr2:152539400-152547600	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:152539800-152547600	Strong transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:152541400-152566800	Weak transcription	Psoas Muscle	Psoas

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