Variant report

Variant	rs4664875
Chromosome Location	chr2:151871888-151871889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151868019..151872391-chr2:151872649..151877183,5	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10206941	0.80[AFR][1000 genomes]
rs10497073	0.97[AFR][1000 genomes]
rs10930374	0.97[AFR][1000 genomes]
rs11890981	0.97[AFR][1000 genomes]
rs11895825	0.94[AFR][1000 genomes]
rs12987549	0.97[AFR][1000 genomes]
rs12987585	0.97[AFR][1000 genomes]
rs13013454	0.97[AFR][1000 genomes]
rs1385421	0.81[AFR][1000 genomes]
rs1485092	0.96[AFR][1000 genomes]
rs1485095	0.86[AFR][1000 genomes]
rs1485103	0.81[AFR][1000 genomes]
rs1485132	0.82[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2086915	0.97[AFR][1000 genomes]
rs2086916	1.00[ASW][hapmap];0.81[CEU][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs34175226	0.85[AFR][1000 genomes]
rs35680581	0.86[AFR][1000 genomes]
rs4664876	0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4664877	0.97[AFR][1000 genomes]
rs4664878	0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4664884	0.97[AFR][1000 genomes]
rs62167172	0.85[AFR][1000 genomes]
rs7560466	0.92[AFR][1000 genomes]
rs7577063	0.91[AFR][1000 genomes]
rs9287920	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv437297	chr2:151869171-151873561	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151865600-151872800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:151871200-151872200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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