Variant report

Variant	rs4665631
Chromosome Location	chr2:21457627-21457628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs182584	0.98[EUR][1000 genomes]
rs312032	0.90[EUR][1000 genomes]
rs312034	0.94[EUR][1000 genomes]
rs312035	0.98[EUR][1000 genomes]
rs312036	0.94[EUR][1000 genomes]
rs312037	0.98[EUR][1000 genomes]
rs312038	0.98[EUR][1000 genomes]
rs312039	0.94[EUR][1000 genomes]
rs312040	0.98[EUR][1000 genomes]
rs312044	0.98[EUR][1000 genomes]
rs312960	1.00[CEU][hapmap]
rs72898450	0.84[EUR][1000 genomes]
rs72898452	0.84[EUR][1000 genomes]
rs72898454	0.84[EUR][1000 genomes]
rs72898467	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21451600-21461800	Weak transcription	Aorta	Aorta
2	chr2:21454200-21458000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:21456000-21457800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:21456200-21457800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:21457600-21458000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:21457600-21458000	Enhancers	Brain Hippocampus Middle	brain
7	chr2:21457600-21458000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:21457600-21458000	Enhancers	Esophagus	oesophagus
9	chr2:21457600-21458000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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