Variant report

Variant	rs4667137
Chromosome Location	chr2:187856247-187856248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13007449	0.94[ASN][1000 genomes]
rs16828575	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16828603	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4666718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667139	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55763386	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs55831424	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55983947	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55988918	0.93[AMR][1000 genomes]
rs58465774	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59938343	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73979610	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73979626	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs73979641	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs73979644	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv528437	chr2:187778830-187907901	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv999207	chr2:187787121-187924667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv536084	chr2:187787121-187924667	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links