Variant report

Variant	rs4668323
Chromosome Location	chr2:171661193-171661194
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10048650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1420389	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1420390	0.84[AMR][1000 genomes]
rs1548903	0.81[AMR][1000 genomes]
rs1861462	0.93[YRI][hapmap]
rs1861463	0.82[YRI][hapmap]
rs2058726	0.88[YRI][hapmap]
rs2192987	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2883887	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4668312	0.94[YRI][hapmap]
rs6433242	0.81[YRI][hapmap]
rs6721280	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6733154	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6749003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6750787	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6756891	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806894	chr2:171651783-171679041	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:171659200-171668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:171660600-171661200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links