Variant report

Variant	rs4668636
Chromosome Location	chr2:9852679-9852680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9852433..9855684-chr2:9858975..9863152,3	K562	blood:
2	chr2:9843482..9849818-chr2:9850036..9855209,6	K562	blood:
3	chr2:9768827..9772681-chr2:9851903..9856866,5	K562	blood:
4	chr2:9851396..9853236-chr2:9853754..9855301,2	MCF-7	breast:
5	chr2:9851071..9852686-chr2:9893395..9896154,2	K562	blood:
6	chr2:9847027..9849818-chr2:9850088..9852900,2	K562	blood:
7	chr2:9851728..9854489-chr2:10259269..10262065,2	K562	blood:

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction
ENSG00000272524	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10164660	0.84[ASN][1000 genomes]
rs10178017	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10200779	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10202938	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929596	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10929597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10929598	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10929600	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929602	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929605	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1123269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11674642	0.95[JPT][hapmap]
rs11680429	1.00[JPT][hapmap]
rs11695437	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11892176	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11901380	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11902412	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11902608	0.84[ASN][1000 genomes]
rs12466594	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12472594	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475853	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs12476232	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12991432	0.85[ASN][1000 genomes]
rs12993968	0.83[ASN][1000 genomes]
rs13024852	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13028425	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13395171	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13398163	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13398193	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13398304	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1877949	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1877950	0.85[ASN][1000 genomes]
rs1877951	0.85[ASN][1000 genomes]
rs1877953	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2357263	0.90[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2357264	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2357265	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4459704	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4507070	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668637	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668638	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4668639	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4668640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4668641	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4668642	0.84[ASN][1000 genomes]
rs4668643	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4669427	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4669428	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4669429	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4669430	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4669432	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669433	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669435	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669437	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4669441	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669445	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4669446	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs5020306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58961346	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6432033	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6724483	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6727688	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6735280	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6736421	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6738072	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6752842	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6756567	0.82[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7423455	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7578933	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7592044	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7602784	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7605675	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs885572	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9845400-9860600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:9846800-9854800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:9851400-9855400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:9851600-9853000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:9851800-9852800	Enhancers	Fetal Thymus	thymus
6	chr2:9852000-9852800	Enhancers	Left Ventricle	heart
7	chr2:9852000-9853000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr2:9852000-9853000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:9852000-9853000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:9852000-9853000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr2:9852200-9852800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:9852200-9853200	Enhancers	GM12878-XiMat	blood
13	chr2:9852400-9852800	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:9852400-9852800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr2:9852400-9852800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr2:9852400-9852800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:9852400-9852800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr2:9852400-9852800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr2:9852400-9852800	Enhancers	Right Ventricle	heart
20	chr2:9852400-9853000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:9852400-9853000	Enhancers	K562	blood
22	chr2:9852600-9852800	Enhancers	Right Atrium	heart
23	chr2:9852600-9852800	Enhancers	Spleen	Spleen

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