Variant report

Variant	rs4668701
Chromosome Location	chr2:11059730-11059731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11055046..11056818-chr2:11058961..11061152,2	MCF-7	breast:
2	chr2:11057377..11060185-chr2:11071124..11073413,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520049	1.00[CHB][hapmap]
rs11489	1.00[CHB][hapmap]
rs11674438	0.94[ASN][1000 genomes]
rs11683190	1.00[CHB][hapmap]
rs11686660	1.00[CHB][hapmap]
rs13415153	1.00[CHB][hapmap]
rs17365015	1.00[CHB][hapmap]
rs2029426	1.00[CHB][hapmap]
rs3732104	0.83[ASN][1000 genomes]
rs4669616	1.00[CHB][hapmap]
rs4999996	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722515	1.00[CHB][hapmap]
rs6756520	1.00[CHB][hapmap]
rs6756672	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817618	chr2:11055298-11075754	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv469438	chr2:11055298-11085744	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv580970	chr2:11055298-11085744	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11054200-11063600	Enhancers	Fetal Thymus	thymus
2	chr2:11054400-11072400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:11055200-11069800	Weak transcription	A549	lung
4	chr2:11056200-11060200	Weak transcription	Brain Angular Gyrus	brain
5	chr2:11056400-11060200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:11056600-11059800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:11056600-11060000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:11056600-11060000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:11057000-11069400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:11057600-11070600	Weak transcription	Fetal Brain Female	brain
11	chr2:11058600-11060200	Enhancers	Fetal Muscle Leg	muscle
12	chr2:11058600-11060400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr2:11058600-11063000	Enhancers	Fetal Brain Male	brain
14	chr2:11058800-11059800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:11058800-11059800	Enhancers	Pancreas	Pancrea
16	chr2:11058800-11059800	Enhancers	Right Atrium	heart
17	chr2:11058800-11059800	Enhancers	Hela-S3	cervix
18	chr2:11058800-11060400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:11058800-11060600	Enhancers	Brain Anterior Caudate	brain
20	chr2:11058800-11061400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:11059000-11060400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr2:11059000-11062800	Enhancers	Thymus	Thymus
23	chr2:11059200-11059800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr2:11059200-11059800	Enhancers	K562	blood
25	chr2:11059400-11059800	Enhancers	Colonic Mucosa	Colon
26	chr2:11059400-11059800	Enhancers	Gastric	stomach
27	chr2:11059400-11060600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr2:11059400-11060800	Enhancers	Brain Cingulate Gyrus	brain
29	chr2:11059600-11059800	Enhancers	Brain Germinal Matrix	brain
30	chr2:11059600-11059800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:11059600-11059800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr2:11059600-11059800	Enhancers	NHLF	lung
33	chr2:11059600-11060600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr2:11059600-11060800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links