Variant report

Variant	rs4670184
Chromosome Location	chr2:33395122-33395123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10205739	0.81[EUR][1000 genomes]
rs10211514	0.84[AMR][1000 genomes]
rs10495783	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124309	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11676681	0.85[AMR][1000 genomes]
rs11681694	0.82[EUR][1000 genomes]
rs12611532	0.84[AMR][1000 genomes]
rs1377946	0.82[EUR][1000 genomes]
rs1377947	0.91[EUR][1000 genomes]
rs17640469	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17641115	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1869542	0.89[EUR][1000 genomes]
rs1902049	0.81[ASN][1000 genomes]
rs2290449	0.81[EUR][1000 genomes]
rs2367619	0.84[AMR][1000 genomes]
rs2367620	0.83[AMR][1000 genomes]
rs2367624	0.90[EUR][1000 genomes]
rs34577456	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4542826	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670186	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4670225	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670252	0.84[AMR][1000 genomes]
rs4670307	0.83[EUR][1000 genomes]
rs4670660	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4670822	0.84[AMR][1000 genomes]
rs4670833	0.84[AMR][1000 genomes]
rs4670857	0.84[AMR][1000 genomes]
rs4670860	0.84[AMR][1000 genomes]
rs4670863	0.84[AMR][1000 genomes]
rs4671016	0.81[EUR][1000 genomes]
rs5006120	0.84[AMR][1000 genomes]
rs5006124	0.83[AMR][1000 genomes]
rs5006125	0.84[AMR][1000 genomes]
rs55911139	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55957962	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58920936	0.85[EUR][1000 genomes]
rs62146679	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62146704	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6543689	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6543690	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6543691	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6543698	0.83[AMR][1000 genomes]
rs6707911	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6707962	0.84[AMR][1000 genomes]
rs6708836	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6712473	0.82[AMR][1000 genomes]
rs6720059	0.84[AMR][1000 genomes]
rs6720185	0.84[AMR][1000 genomes]
rs6728094	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6736908	0.83[AMR][1000 genomes]
rs6739323	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6743685	0.80[ASN][1000 genomes]
rs6748806	0.84[AMR][1000 genomes]
rs6751657	0.84[AMR][1000 genomes]
rs6759943	0.84[AMR][1000 genomes]
rs7423390	0.88[EUR][1000 genomes]
rs7571401	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9308931	0.89[EUR][1000 genomes]
rs961239	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs964702	0.91[EUR][1000 genomes]
rs996102	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33369800-33404000	Weak transcription	Right Ventricle	heart
2	chr2:33371600-33395600	Weak transcription	Psoas Muscle	Psoas
3	chr2:33375000-33408400	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:33392200-33411800	Weak transcription	Left Ventricle	heart
5	chr2:33392600-33405600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:33392800-33413600	Weak transcription	HUVEC	blood vessel
7	chr2:33393000-33405000	Weak transcription	Aorta	Aorta
8	chr2:33393200-33408400	Weak transcription	NH-A	brain
9	chr2:33393400-33405000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:33394000-33396800	Weak transcription	Fetal Stomach	stomach
11	chr2:33394000-33420600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:33394200-33401600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:33394400-33396000	Weak transcription	Ovary	ovary
14	chr2:33394400-33401600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:33394400-33406000	Weak transcription	Osteobl	bone
16	chr2:33394400-33408200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:33394400-33408400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:33394400-33410000	Weak transcription	NHLF	lung
19	chr2:33394400-33412000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:33394400-33415000	Weak transcription	NHDF-Ad	bronchial
21	chr2:33394800-33408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:33394800-33408400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links