Variant report

Variant	rs4670256
Chromosome Location	chr2:33360556-33360557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33360506..33363015-chr2:33369952..33372450,2	K562	blood:
2	chr2:33355814..33359074-chr2:33359730..33364790,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12620839	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1545550	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1012946	chr2:33294522-33370391	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv535626	chr2:33294522-33370391	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv873789	chr2:33297967-33390188	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33358400-33360600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:33358400-33361200	Active TSS	Brain Cingulate Gyrus	brain
3	chr2:33358600-33361200	Active TSS	Brain Anterior Caudate	brain
4	chr2:33358600-33362000	Active TSS	Brain Angular Gyrus	brain
5	chr2:33358600-33362600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:33358800-33361200	Weak transcription	Gastric	stomach
7	chr2:33358800-33362000	Active TSS	Ovary	ovary
8	chr2:33358800-33363200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr2:33358800-33371600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:33359000-33362000	Active TSS	Psoas Muscle	Psoas
11	chr2:33359000-33362000	Active TSS	Right Atrium	heart
12	chr2:33359000-33362800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:33359000-33362800	Active TSS	Aorta	Aorta
14	chr2:33359000-33363000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:33359000-33363000	Active TSS	Stomach Smooth Muscle	stomach
16	chr2:33359200-33360600	Active TSS	Fetal Lung	lung
17	chr2:33359200-33361200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:33359200-33361200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:33359200-33361200	Active TSS	Brain Substantia Nigra	brain
20	chr2:33359200-33361600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:33359200-33362000	Active TSS	Right Ventricle	heart
22	chr2:33359200-33362600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:33359200-33362800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:33359200-33362800	Active TSS	NHDF-Ad	bronchial
25	chr2:33359200-33362800	Active TSS	NHLF	lung
26	chr2:33359400-33360600	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr2:33359400-33360600	Active TSS	Colon Smooth Muscle	Colon
28	chr2:33359400-33360800	Active TSS	Duodenum Mucosa	Duodenum
29	chr2:33359400-33361000	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr2:33359400-33361400	Active TSS	HSMMtube	muscle
31	chr2:33359400-33361600	Active TSS	Muscle Satellite Cultured Cells	--
32	chr2:33359600-33360600	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr2:33359600-33360800	Active TSS	Fetal Intestine Large	intestine
34	chr2:33359600-33361400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr2:33359600-33361400	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr2:33359600-33361600	Active TSS	Osteobl	bone
37	chr2:33359800-33360800	Active TSS	HUVEC	blood vessel
38	chr2:33359800-33361000	Active TSS	Rectal Smooth Muscle	rectum
39	chr2:33360000-33360800	Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr2:33360000-33361000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr2:33360000-33361200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:33360000-33361200	Active TSS	Fetal Stomach	stomach
43	chr2:33360000-33361800	Enhancers	Adipose Nuclei	Adipose
44	chr2:33360000-33362000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr2:33360000-33363000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr2:33360000-33363200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr2:33360000-33367400	Weak transcription	Lung	lung
48	chr2:33360000-33373000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:33360000-33378400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:33360200-33360600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links