Variant report

Variant	rs467049
Chromosome Location	chr5:94614422-94614423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs26392	0.87[ASN][1000 genomes]
rs614940	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94602400-94616200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:94611600-94615200	Weak transcription	Fetal Brain Female	brain
3	chr5:94613600-94616200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:94613600-94616200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:94613600-94616200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:94613600-94616400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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