Variant report

Variant	rs4670612
Chromosome Location	chr2:37020263-37020264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11124544	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675969	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677279	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987048	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276669	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4670169	0.92[EUR][1000 genomes]
rs4670170	0.92[EUR][1000 genomes]
rs4670613	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670614	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4670615	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37010000-37021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:37012800-37024800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37013000-37033000	Weak transcription	Ovary	ovary
4	chr2:37013200-37024400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:37016800-37024600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:37018400-37021200	Enhancers	Thymus	Thymus
7	chr2:37018400-37021400	Enhancers	Fetal Thymus	thymus
8	chr2:37019200-37020800	Enhancers	Dnd41	blood
9	chr2:37019200-37024600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:37019600-37021400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:37019800-37020400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:37019800-37020600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr2:37020000-37020400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:37020000-37020800	Enhancers	Primary T cells from cord blood	blood
15	chr2:37020200-37020600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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