Variant report

Variant	rs4670676
Chromosome Location	chr2:37411222-37411223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10176031	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10205833	0.83[CEU][hapmap]
rs10432634	0.91[CEU][hapmap]
rs10865122	0.83[CEU][hapmap]
rs11124565	0.82[CEU][hapmap]
rs11687555	0.81[EUR][1000 genomes]
rs11895771	0.91[CEU][hapmap]
rs11897442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4374352	0.86[CEU][hapmap]
rs55920890	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62134999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6709897	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6722645	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6728951	0.91[CEU][hapmap]
rs6742281	0.83[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4670676	ALG6	cis	Cerebellum	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37408000-37416600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37408600-37416600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:37409600-37415600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:37409600-37416600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:37410000-37413000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:37410600-37415400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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