Variant report

Variant	rs4670717
Chromosome Location	chr2:33786389-33786390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33762022..33764800-chr2:33783496..33786772,3	K562	blood:
2	chr2:33777937..33780353-chr2:33783539..33786426,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152689	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13388446	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13388566	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13406103	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13408890	0.87[AFR][1000 genomes]
rs13426291	0.81[EUR][1000 genomes]
rs13428482	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17597647	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17597696	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1971224	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670189	0.84[AMR][1000 genomes]
rs4670680	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4670681	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7559049	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4670717	RASGRP3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33740800-33790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:33761000-33789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
6	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:33772600-33791000	Strong transcription	GM12878-XiMat	blood
8	chr2:33772600-33793400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:33774000-33790200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
11	chr2:33776800-33790600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr2:33778400-33796800	Weak transcription	Liver	Liver
13	chr2:33778400-33806400	Weak transcription	Primary T cells from cord blood	blood
14	chr2:33778400-33807600	Weak transcription	NH-A	brain
15	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:33780400-33787600	Weak transcription	Placenta	Placenta
18	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:33780600-33787800	Weak transcription	Brain Anterior Caudate	brain
21	chr2:33780600-33789200	Weak transcription	Ovary	ovary
22	chr2:33780600-33790800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr2:33780600-33791600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr2:33780800-33797400	Weak transcription	Brain Angular Gyrus	brain
25	chr2:33781200-33792800	Weak transcription	HUVEC	blood vessel
26	chr2:33781200-33809800	Weak transcription	Gastric	stomach
27	chr2:33781600-33789200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:33781600-33790400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:33781800-33792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:33782000-33807000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr2:33782200-33791800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:33783000-33786800	Strong transcription	Adipose Nuclei	Adipose
33	chr2:33783400-33786400	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr2:33784000-33792800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
36	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
37	chr2:33784200-33792600	Weak transcription	Spleen	Spleen
38	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:33784400-33786400	Weak transcription	Lung	lung
40	chr2:33784400-33792200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:33784400-33796000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:33784600-33787400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr2:33784600-33808400	Weak transcription	Fetal Muscle Leg	muscle
44	chr2:33784800-33791600	Weak transcription	Esophagus	oesophagus
45	chr2:33785000-33787600	Weak transcription	Brain Hippocampus Middle	brain
46	chr2:33785000-33789000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:33785200-33787800	Weak transcription	Brain Substantia Nigra	brain
48	chr2:33785600-33787400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr2:33785600-33787600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr2:33785600-33789200	Weak transcription	HSMMtube	muscle

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