Variant report
Variant | rs4671312 |
---|---|
Chromosome Location | chr2:57769166-57769167 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOS | chr2:57769088-57769421 | MCF10A-Er-Src | breast: | n/a | n/a |
2 | STAT3 | chr2:57768983-57769178 | MCF10A-Er-Src | breast: | n/a | n/a |
3 | FOS | chr2:57769085-57769426 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000212168 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10186590 | 0.86[EUR][1000 genomes] |
rs10865302 | 0.86[EUR][1000 genomes] |
rs10865303 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11125716 | 0.86[EUR][1000 genomes] |
rs11125717 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12614711 | 0.82[YRI][hapmap] |
rs13033251 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1405825 | 0.86[EUR][1000 genomes] |
rs1527624 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
rs1527626 | 0.86[EUR][1000 genomes] |
rs1527627 | 0.86[EUR][1000 genomes] |
rs2245262 | 0.86[EUR][1000 genomes] |
rs2245270 | 0.86[EUR][1000 genomes] |
rs2460102 | 0.86[EUR][1000 genomes] |
rs4671313 | 0.86[EUR][1000 genomes] |
rs6722978 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6723089 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6749498 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rs6761423 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9309300 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999898 | chr2:57193127-57901238 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv535729 | chr2:57193127-57901238 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1007118 | chr2:57562051-58147588 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv1001176 | chr2:57618795-57770261 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv834137 | chr2:57683649-57913898 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv874193 | chr2:57758608-58066673 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv979332 | chr2:57760184-57771455 | Enhancers Weak transcription | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:57761800-57770400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |