Variant report

Variant	rs4671457
Chromosome Location	chr2:63346356-63346357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDPCP-4	chr2:63344986-63346677	NONHSAT071052
2	lnc-WDPCP-4	chr2:63346146-63346398	NONHSAT071053

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10206947	0.83[YRI][hapmap]
rs1025132	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11890276	0.81[EUR][1000 genomes]
rs13002109	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs13389366	0.87[YRI][hapmap]
rs2162014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421860	0.96[YRI][hapmap]
rs2421916	0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4316930	0.80[YRI][hapmap]
rs6723846	0.82[ASN][1000 genomes]
rs6754628	0.81[ASN][1000 genomes]
rs984682	0.90[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63342600-63349600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:63343600-63349600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:63344200-63348000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:63344400-63350600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:63344400-63360400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:63344800-63350200	Weak transcription	Fetal Stomach	stomach
7	chr2:63345400-63346400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr2:63345400-63346400	Strong transcription	Brain Hippocampus Middle	brain
9	chr2:63345600-63346400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:63345800-63346400	Strong transcription	Fetal Brain Female	brain
11	chr2:63345800-63346600	Strong transcription	Left Ventricle	heart
12	chr2:63345800-63348000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:63346000-63346400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:63346000-63346400	ZNF genes & repeats	Gastric	stomach
15	chr2:63346000-63346600	ZNF genes & repeats	Aorta	Aorta
16	chr2:63346000-63346800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr2:63346000-63348600	Weak transcription	Right Ventricle	heart
18	chr2:63346200-63346400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:63346200-63346600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:63346200-63346600	Strong transcription	Adipose Nuclei	Adipose
21	chr2:63346200-63346600	ZNF genes & repeats	Lung	lung
22	chr2:63346200-63346600	ZNF genes & repeats	Ovary	ovary

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