Variant report

Variant	rs4671831
Chromosome Location	chr2:67917864-67917865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10165761	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10179159	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10188512	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10191089	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10193810	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10194001	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10203976	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13390163	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13405830	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13417798	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13430868	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1367458	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1430773	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1549779	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1549780	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1549781	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1978657	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4671829	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4671832	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4671833	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4671834	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4671835	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4671837	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4671838	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62155370	0.87[AMR][1000 genomes]
rs62155371	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6717648	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs724567	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs737359	0.84[AMR][1000 genomes]
rs7564631	0.83[AMR][1000 genomes]
rs966443	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs974482	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67917400-67921800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:67917800-67918000	Enhancers	Fetal Stomach	stomach

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