Variant report

Variant	rs4672013
Chromosome Location	chr2:53059791-53059792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10168366	0.81[EUR][1000 genomes]
rs10191767	0.81[EUR][1000 genomes]
rs10191772	0.81[EUR][1000 genomes]
rs10490580	0.81[EUR][1000 genomes]
rs10490582	0.82[EUR][1000 genomes]
rs10865268	0.82[EUR][1000 genomes]
rs10865269	0.82[EUR][1000 genomes]
rs10865270	0.82[EUR][1000 genomes]
rs10865271	0.82[EUR][1000 genomes]
rs11125447	0.82[EUR][1000 genomes]
rs11125448	0.82[EUR][1000 genomes]
rs11125449	0.81[EUR][1000 genomes]
rs11125451	0.85[EUR][1000 genomes]
rs11125452	0.85[EUR][1000 genomes]
rs11674281	0.81[EUR][1000 genomes]
rs11679043	0.84[EUR][1000 genomes]
rs11680083	0.82[EUR][1000 genomes]
rs12713220	0.84[EUR][1000 genomes]
rs12987207	0.82[EUR][1000 genomes]
rs12989176	0.81[EUR][1000 genomes]
rs13008949	0.85[EUR][1000 genomes]
rs13012180	0.81[EUR][1000 genomes]
rs1376559	0.83[EUR][1000 genomes]
rs1376560	0.83[EUR][1000 genomes]
rs1549749	0.89[ASN][1000 genomes]
rs1584657	0.84[EUR][1000 genomes]
rs2195655	0.83[EUR][1000 genomes]
rs2195656	0.83[EUR][1000 genomes]
rs2195657	0.83[EUR][1000 genomes]
rs2217457	0.81[EUR][1000 genomes]
rs2883992	0.83[EUR][1000 genomes]
rs4364055	0.81[EUR][1000 genomes]
rs4365497	0.81[EUR][1000 genomes]
rs4671237	0.82[EUR][1000 genomes]
rs4672008	0.82[EUR][1000 genomes]
rs4672012	0.86[EUR][1000 genomes]
rs4672015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7585575	0.89[ASN][1000 genomes]
rs7606874	0.83[EUR][1000 genomes]
rs785301	0.81[EUR][1000 genomes]
rs785303	0.85[EUR][1000 genomes]
rs785307	0.81[EUR][1000 genomes]
rs785308	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs919531	0.85[EUR][1000 genomes]
rs993344	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998380	chr2:52891706-53222155	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2763631	chr2:52910862-53169629	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv874135	chr2:52937317-53061834	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1006244	chr2:52958322-53169617	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1005813	chr2:52959769-53114865	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010978	chr2:52959769-53249951	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1014068	chr2:52960353-53169617	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53059600-53059800	Enhancers	Pancreas	Pancrea
2	chr2:53059600-53060400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links