Variant report

Variant	rs4672594
Chromosome Location	chr2:211627449-211627450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1013658	chr2:211447246-211809945	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536135	chr2:211447246-211809945	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536136	chr2:211497528-211830019	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv821631	chr2:211528918-211658981	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv522114	chr2:211619571-211765062	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211627200-211627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:211627200-211627800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:211627200-211627800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:211627200-211627800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:211627200-211627800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:211627200-211628000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr2:211627200-211628000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:211627200-211628000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:211627200-211628600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:211627200-211628600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:211627200-211629400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:211627400-211627600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr2:211627400-211627800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:211627400-211628000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:211627400-211628200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr2:211627400-211628800	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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