Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10197270	0.93[ASN][1000 genomes]
rs10210742	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10932419	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11692869	0.95[ASN][1000 genomes]
rs12468427	0.91[ASN][1000 genomes]
rs12473708	0.93[ASN][1000 genomes]
rs12478950	0.87[ASN][1000 genomes]
rs1357125	0.82[ASN][1000 genomes]
rs1357126	0.82[ASN][1000 genomes]
rs1464443	0.93[ASN][1000 genomes]
rs1521550	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1521553	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16847568	0.91[ASN][1000 genomes]
rs16847580	0.93[ASN][1000 genomes]
rs17344051	0.98[ASN][1000 genomes]
rs17344065	0.84[ASN][1000 genomes]
rs17415969	0.95[ASN][1000 genomes]
rs1851261	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2139939	0.83[ASN][1000 genomes]
rs2371436	0.82[ASN][1000 genomes]
rs4672636	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4672638	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56993927	1.00[ASN][1000 genomes]
rs60885616	0.91[ASN][1000 genomes]
rs61193005	0.87[ASN][1000 genomes]
rs6712126	0.89[ASN][1000 genomes]
rs7574462	0.80[EUR][1000 genomes]
rs939645	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875798	chr2:212852669-212961992	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875803	chr2:212874828-212969560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212942800-212943400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:212942800-212943400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:212943000-212943400	Active TSS	GM12878-XiMat	blood
4	chr2:212943200-212943400	Enhancers	Dnd41	blood

Quick Search: