Variant report

Variant	rs4679508
Chromosome Location	chr3:59932094-59932095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10510822	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10510823	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17061544	0.91[AMR][1000 genomes]
rs17302746	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17302837	0.91[AMR][1000 genomes]
rs1970842	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2101339	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3772467	0.89[AMR][1000 genomes]
rs4679623	1.00[ASN][1000 genomes]
rs4679624	0.83[ASN][1000 genomes]
rs55910136	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56257507	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57347814	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61614530	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802771	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59927200-59938400	Weak transcription	Fetal Thymus	thymus
2	chr3:59927600-59940200	Weak transcription	Thymus	Thymus
3	chr3:59928000-59937200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:59928200-59932800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:59928400-59938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:59928800-59933600	Weak transcription	Dnd41	blood
7	chr3:59928800-59942800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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