Variant report

Variant	rs4679600
Chromosome Location	chr3:59696535-59696536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59692251..59693930-chr3:59694566..59696970,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56915453	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73092446	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9845353	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4679600	C3orf51	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59692400-59697000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:59694800-59696600	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:59694800-59697200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:59695000-59696600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:59695000-59696800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:59695200-59696600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:59695200-59696800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:59695200-59696800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:59695200-59696800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:59695400-59696600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:59695400-59696600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:59695400-59696600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr3:59695400-59696800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:59695400-59696800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:59695600-59697000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr3:59695800-59697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:59696000-59696600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:59696000-59697000	Enhancers	Dnd41	blood
19	chr3:59696200-59696600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:59696200-59697800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:59696400-59697200	Enhancers	Primary T cells from cord blood	blood
22	chr3:59696400-59697400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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