Variant report

Variant	rs4679753
Chromosome Location	chr3:155387645-155387646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12628990	1.00[JPT][hapmap]
rs12629267	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155390200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
6	chr3:155385200-155394000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155385400-155390000	Weak transcription	Fetal Intestine Large	intestine
8	chr3:155386200-155390000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:155387400-155389200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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