Variant report

Variant	rs4680005
Chromosome Location	chr3:150585344-150585345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4680007	0.81[JPT][hapmap]
rs6768276	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4680005	UBQLN4	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150583400-150588200	Weak transcription	Osteobl	bone
2	chr3:150583600-150586000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:150583600-150586200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:150583600-150588400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:150583800-150591200	Enhancers	Placenta	Placenta
6	chr3:150584400-150585800	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:150584600-150585800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:150584600-150586000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:150584800-150587400	Weak transcription	Fetal Heart	heart
10	chr3:150584800-150587800	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:150585000-150586000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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