Variant report

Variant	rs4680213
Chromosome Location	chr3:155433250-155433251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58689622	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6789127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638454	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4680213	TRAP1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155431400-155433400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155431600-155433400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:155431800-155433400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155432400-155434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:155432400-155461600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:155432600-155433600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:155432600-155434800	Enhancers	HepG2	liver
9	chr3:155432600-155435000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:155432800-155434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155432800-155434400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:155433200-155434800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:155433200-155435000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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