Variant report

Variant	rs4680530
Chromosome Location	chr3:159612616-159612617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159609810..159612666-chr3:159615841..159617422,2	MCF-7	breast:
2	chr3:159611466..159613848-chr3:159622736..159624341,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55691228	1.00[ASN][1000 genomes]
rs9812520	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159590800-159617600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:159596200-159613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:159599800-159620400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:159601200-159615200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:159601400-159613800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:159601400-159615200	Weak transcription	Ovary	ovary
7	chr3:159601400-159618600	Weak transcription	Fetal Brain Male	brain
8	chr3:159601400-159620400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:159601600-159620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:159603000-159617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:159603400-159616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:159603800-159615200	Weak transcription	Fetal Intestine Large	intestine
13	chr3:159605800-159620400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:159608800-159616200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:159609000-159617000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:159609400-159614200	Strong transcription	NHEK	skin
17	chr3:159609400-159616400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:159609400-159616600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:159609600-159614800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:159609600-159616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:159609800-159613200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:159609800-159613200	Genic enhancers	Brain Angular Gyrus	brain
23	chr3:159609800-159616000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:159609800-159617400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:159610000-159613200	Genic enhancers	Brain Hippocampus Middle	brain
26	chr3:159610000-159613400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr3:159610200-159614800	Strong transcription	HUVEC	blood vessel
28	chr3:159610200-159616000	Weak transcription	Fetal Stomach	stomach
29	chr3:159610400-159613600	Strong transcription	Fetal Brain Female	brain
30	chr3:159610400-159614200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:159610400-159614800	Strong transcription	NH-A	brain
32	chr3:159610600-159613000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:159610600-159613400	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:159610600-159614000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr3:159610600-159615800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:159610600-159620400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:159610600-159622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:159610800-159613400	Genic enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:159610800-159614400	Strong transcription	HSMM	muscle
40	chr3:159610800-159615200	Weak transcription	HMEC	breast
41	chr3:159610800-159615400	Weak transcription	Fetal Kidney	kidney
42	chr3:159610800-159616000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:159610800-159620800	Weak transcription	Liver	Liver
44	chr3:159611000-159615200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:159611000-159616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:159611200-159613600	Strong transcription	Psoas Muscle	Psoas
47	chr3:159611200-159614800	Strong transcription	HSMMtube	muscle
48	chr3:159611200-159615200	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:159611200-159617400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:159611400-159614000	Genic enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links