Variant report

Variant	rs4680540
Chromosome Location	chr3:159745057-159745058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4680553	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159741600-159745200	Weak transcription	HMEC	breast
2	chr3:159743600-159745400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:159743600-159747400	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:159744000-159747000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:159744200-159745600	Enhancers	Esophagus	oesophagus
7	chr3:159744400-159746000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159744600-159745200	Enhancers	NH-A	brain
9	chr3:159744600-159746200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:159744600-159746400	Enhancers	NHDF-Ad	bronchial
11	chr3:159744600-159746400	Enhancers	NHLF	lung
12	chr3:159744800-159745400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:159744800-159745400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:159744800-159745400	Enhancers	Gastric	stomach
15	chr3:159744800-159746200	Flanking Active TSS	GM12878-XiMat	blood
16	chr3:159745000-159745200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:159745000-159745200	Flanking Active TSS	Osteobl	bone
18	chr3:159745000-159745600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:159745000-159746000	Enhancers	HSMM	muscle
20	chr3:159745000-159746200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:159745000-159746200	Enhancers	Muscle Satellite Cultured Cells	--

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