Variant report

Variant	rs4681049
Chromosome Location	chr3:25396313-25396314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1351784	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1483843	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4681051	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6784604	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9836368	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25392400-25396800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:25392800-25396600	Weak transcription	Fetal Brain Male	brain
3	chr3:25395200-25397000	Enhancers	Osteobl	bone
4	chr3:25395200-25397400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:25395600-25396400	Enhancers	NH-A	brain
6	chr3:25395800-25397200	Enhancers	Fetal Lung	lung
7	chr3:25395800-25397400	Enhancers	NHDF-Ad	bronchial
8	chr3:25396000-25397400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:25396200-25397000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:25396200-25397000	Enhancers	Fetal Stomach	stomach
11	chr3:25396200-25398000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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