Variant report

Variant	rs4681332
Chromosome Location	chr3:144194907-144194908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1178898	0.89[EUR][1000 genomes]
rs1178902	0.89[EUR][1000 genomes]
rs13076501	0.93[EUR][1000 genomes]
rs1527231	0.90[EUR][1000 genomes]
rs1527237	0.93[ASN][1000 genomes]
rs1656986	0.90[EUR][1000 genomes]
rs1726523	0.89[EUR][1000 genomes]
rs1726525	0.89[EUR][1000 genomes]
rs1726537	0.90[EUR][1000 genomes]
rs1880902	0.84[EUR][1000 genomes]
rs2575182	0.84[EUR][1000 genomes]
rs2717378	0.84[EUR][1000 genomes]
rs73009079	0.81[AFR][1000 genomes]
rs759968	0.89[EUR][1000 genomes]
rs7628404	0.94[EUR][1000 genomes]
rs7643311	0.82[CHB][hapmap]
rs9845422	0.93[EUR][1000 genomes]
rs9857731	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9864125	0.93[EUR][1000 genomes]
rs9871303	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4681332	PLSCR1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144193800-144196200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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