Variant report

Variant	rs4681611
Chromosome Location	chr3:150076084-150076085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55752233	0.82[EUR][1000 genomes]
rs56782857	0.82[EUR][1000 genomes]
rs57272394	0.97[ASN][1000 genomes]
rs59500396	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73003262	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003264	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003268	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73005439	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73869210	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150068200-150077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:150071000-150079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:150071000-150080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:150071000-150080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:150071000-150080000	Weak transcription	HMEC	breast
6	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
7	chr3:150075000-150076800	Enhancers	Fetal Heart	heart
8	chr3:150075200-150076400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:150075600-150076200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:150075600-150076200	Enhancers	Brain Anterior Caudate	brain
11	chr3:150075800-150076200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:150075800-150076200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:150075800-150076200	Enhancers	Brain Hippocampus Middle	brain
14	chr3:150075800-150076200	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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