Variant report

Variant	rs4682140
Chromosome Location	chr3:113410351-113410352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113402818..113405675-chr3:113409623..113412194,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12495351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861260	0.94[EUR][1000 genomes]
rs2290477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682141	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113380000-113413800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:113380000-113414000	Weak transcription	NH-A	brain
3	chr3:113380800-113413400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:113384200-113413600	Weak transcription	Colonic Mucosa	Colon
5	chr3:113387200-113412000	Weak transcription	Fetal Kidney	kidney
6	chr3:113395600-113414400	Weak transcription	Esophagus	oesophagus
7	chr3:113396200-113413800	Weak transcription	Fetal Heart	heart
8	chr3:113396200-113414000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:113396400-113413000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:113396600-113412800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:113396600-113414000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:113397400-113411600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:113403400-113414000	Weak transcription	HSMMtube	muscle
14	chr3:113403800-113413400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:113404200-113410600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:113404200-113412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:113404200-113412600	Weak transcription	Fetal Lung	lung
18	chr3:113404200-113413800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:113404400-113412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:113404400-113414400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:113404600-113412600	Weak transcription	Ovary	ovary
22	chr3:113404600-113412800	Weak transcription	Aorta	Aorta
23	chr3:113404600-113413600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:113405200-113412000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:113405200-113413200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:113405200-113413600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:113405200-113413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:113405200-113414200	Weak transcription	Right Ventricle	heart
29	chr3:113405400-113410600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:113405400-113412800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:113405400-113413200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:113405400-113413600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:113405400-113413800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:113405400-113413800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:113405400-113414000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:113405400-113414000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:113405400-113414000	Weak transcription	HMEC	breast
38	chr3:113405400-113414000	Weak transcription	NHLF	lung
39	chr3:113405600-113410400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:113405600-113410400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:113405600-113412000	Weak transcription	Left Ventricle	heart
42	chr3:113405600-113413200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:113405600-113413200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr3:113405600-113413600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:113405600-113413600	Weak transcription	Lung	lung
46	chr3:113405600-113413800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:113405600-113413800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:113405600-113413800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:113405600-113413800	Weak transcription	Fetal Stomach	stomach
50	chr3:113405600-113414000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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