Variant report

Variant	rs4682460
Chromosome Location	chr3:112772058-112772059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112770714..112773506-chr3:112929174..112932492,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144857	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4682450	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770200-112772200	Enhancers	Primary T cells from cord blood	blood
3	chr3:112770200-112776800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:112770200-112784400	Weak transcription	Primary B cells from cord blood	blood
5	chr3:112770600-112772400	Weak transcription	A549	lung
6	chr3:112770600-112773200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:112770600-112773200	Weak transcription	Liver	Liver
8	chr3:112770600-112773200	Weak transcription	HSMM	muscle
9	chr3:112770600-112773400	Weak transcription	Fetal Heart	heart
10	chr3:112770600-112774800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:112770600-112775600	Weak transcription	Brain Germinal Matrix	brain
12	chr3:112770600-112775800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:112770600-112780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:112770600-112780800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:112770600-112781000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:112770600-112781800	Weak transcription	Left Ventricle	heart
17	chr3:112770600-112782000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:112770600-112783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:112770600-112784200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:112770600-112784400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:112770800-112773000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:112770800-112773600	Weak transcription	NH-A	brain
23	chr3:112770800-112773800	Enhancers	Fetal Brain Male	brain
24	chr3:112770800-112775000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:112770800-112775800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:112770800-112781400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:112770800-112782200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:112770800-112783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:112770800-112787400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr3:112771000-112772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:112771000-112773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:112771000-112773000	Weak transcription	Osteobl	bone
33	chr3:112771000-112773200	Weak transcription	NHDF-Ad	bronchial
34	chr3:112771000-112773200	Weak transcription	NHEK	skin
35	chr3:112771000-112773400	Weak transcription	NHLF	lung
36	chr3:112771000-112774800	Weak transcription	GM12878-XiMat	blood
37	chr3:112771000-112775000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:112771000-112775400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:112771000-112777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:112771000-112783800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:112771000-112784200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
43	chr3:112771200-112773000	Weak transcription	HMEC	breast
44	chr3:112771200-112773200	Weak transcription	Adipose Nuclei	Adipose
45	chr3:112771200-112775800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:112771200-112788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:112771400-112773000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:112771400-112773000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:112771400-112773000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:112771400-112774800	Weak transcription	Fetal Lung	lung

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