Variant report

Variant	rs4682560
Chromosome Location	chr3:109819271-109819272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10934013	1.00[EUR][1000 genomes]
rs12493551	1.00[EUR][1000 genomes]
rs4682557	1.00[EUR][1000 genomes]
rs4682558	1.00[EUR][1000 genomes]
rs4682559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937086	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109818200-109819400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:109818600-109819400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:109818600-109819400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:109819000-109820000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:109819000-109821400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links