Variant report

Variant	rs4682661
Chromosome Location	chr3:134034940-134034941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134024378..134037377-chr3:134063304..134080412,83	MCF-7	breast:
2	chr3:134024307..134037207-chr3:134080573..134100993,88	MCF-7	breast:
3	chr3:134033082..134035437-chr3:134182333..134184840,3	MCF-7	breast:
4	chr3:134034717..134037202-chr3:134054056..134056170,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction
ENSG00000260633	Chromatin interaction
ENSG00000214289	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13094988	0.81[ASN][1000 genomes]
rs1344687	0.95[ASN][1000 genomes]
rs2270733	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400280	0.81[ASN][1000 genomes]
rs34426406	0.92[ASN][1000 genomes]
rs34591691	0.97[ASN][1000 genomes]
rs34596580	0.97[ASN][1000 genomes]
rs34688449	0.97[ASN][1000 genomes]
rs34913236	0.97[ASN][1000 genomes]
rs35160848	0.95[ASN][1000 genomes]
rs35369871	0.97[ASN][1000 genomes]
rs4131649	0.97[ASN][1000 genomes]
rs4131650	0.85[EUR][1000 genomes]
rs4131651	0.97[ASN][1000 genomes]
rs4234420	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270476	0.83[ASN][1000 genomes]
rs4437113	0.95[ASN][1000 genomes]
rs4449291	0.95[ASN][1000 genomes]
rs4470481	0.97[ASN][1000 genomes]
rs4504146	0.83[ASN][1000 genomes]
rs4510358	0.95[ASN][1000 genomes]
rs4533618	0.97[ASN][1000 genomes]
rs4558731	0.95[ASN][1000 genomes]
rs4574266	0.95[ASN][1000 genomes]
rs4682663	0.87[ASN][1000 genomes]
rs6774600	0.97[ASN][1000 genomes]
rs71331752	0.92[ASN][1000 genomes]
rs7431754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614238	0.95[ASN][1000 genomes]
rs7621320	0.97[ASN][1000 genomes]
rs7641605	0.95[ASN][1000 genomes]
rs7644134	0.92[ASN][1000 genomes]
rs7652144	0.95[ASN][1000 genomes]
rs9289466	0.95[ASN][1000 genomes]
rs9289467	0.95[ASN][1000 genomes]
rs9863226	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134030000-134037200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:134030800-134035000	Enhancers	Spleen	Spleen
3	chr3:134032800-134035000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:134032800-134035000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:134032800-134035000	Enhancers	Fetal Muscle Leg	muscle
6	chr3:134032800-134035000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:134032800-134035000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:134032800-134035200	Enhancers	Brain Hippocampus Middle	brain
9	chr3:134033000-134035000	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:134033000-134035200	Enhancers	Stomach Mucosa	stomach
11	chr3:134033000-134035400	Enhancers	HMEC	breast
12	chr3:134033000-134037200	Enhancers	HSMM	muscle
13	chr3:134033200-134035000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:134033200-134035000	Enhancers	Colon Smooth Muscle	Colon
15	chr3:134033200-134035000	Enhancers	Fetal Heart	heart
16	chr3:134033200-134035000	Enhancers	Fetal Intestine Small	intestine
17	chr3:134033200-134035000	Enhancers	Fetal Stomach	stomach
18	chr3:134033200-134035000	Enhancers	Right Atrium	heart
19	chr3:134033200-134035400	Enhancers	HSMMtube	muscle
20	chr3:134033200-134037400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:134033400-134035000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:134033400-134037200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:134033400-134037200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:134033400-134037200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:134033400-134037600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:134033400-134037600	Enhancers	NHEK	skin
27	chr3:134033600-134035000	Enhancers	Liver	Liver
28	chr3:134033600-134036800	Enhancers	NHLF	lung
29	chr3:134033600-134037200	Enhancers	NHDF-Ad	bronchial
30	chr3:134033800-134035000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr3:134033800-134035000	Enhancers	Duodenum Mucosa	Duodenum
32	chr3:134033800-134035000	Enhancers	Rectal Smooth Muscle	rectum
33	chr3:134034000-134035000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
34	chr3:134034000-134037000	Enhancers	Adipose Nuclei	Adipose
35	chr3:134034000-134039400	Weak transcription	Gastric	stomach
36	chr3:134034200-134035000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr3:134034200-134035000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr3:134034200-134035200	Enhancers	Stomach Smooth Muscle	stomach
39	chr3:134034200-134035400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr3:134034200-134037200	Enhancers	A549	lung
41	chr3:134034200-134037600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:134034400-134035200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr3:134034600-134035000	Flanking Active TSS	NH-A	brain
44	chr3:134034600-134046200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:134034800-134035000	Enhancers	Brain Cingulate Gyrus	brain
46	chr3:134034800-134035800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr3:134034800-134035800	Weak transcription	Placenta	Placenta
48	chr3:134034800-134036000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:134034800-134036000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:134034800-134036000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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