Variant report

Variant	rs4682883
Chromosome Location	chr3:43409168-43409169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1034513	0.89[AFR][1000 genomes]
rs17075328	1.00[JPT][hapmap]
rs17075829	1.00[JPT][hapmap]
rs2174636	0.84[AMR][1000 genomes]
rs6772070	0.83[ASN][1000 genomes]
rs6791526	1.00[JPT][hapmap]
rs6796424	1.00[JPT][hapmap]
rs72863603	0.83[ASN][1000 genomes]
rs7632743	0.89[MEX][hapmap]
rs7634209	1.00[JPT][hapmap]

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:43403000-43412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:43404000-43409400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:43404200-43409200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:43404200-43411600	Weak transcription	Brain Substantia Nigra	brain
13	chr3:43404200-43413400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:43404600-43409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:43404600-43409600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:43404800-43412000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:43405000-43414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:43405400-43411000	Weak transcription	Pancreas	Pancrea
21	chr3:43405400-43414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:43405600-43414800	Weak transcription	Osteobl	bone
23	chr3:43405800-43415000	Weak transcription	HSMM	muscle
24	chr3:43406600-43409200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:43406800-43414000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:43406800-43414600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:43407000-43409800	Weak transcription	Fetal Intestine Large	intestine
28	chr3:43407200-43409200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:43407200-43409200	Genic enhancers	Fetal Stomach	stomach
30	chr3:43407200-43409200	Enhancers	HSMMtube	muscle
31	chr3:43407200-43413000	Weak transcription	Thymus	Thymus
32	chr3:43407600-43410200	Weak transcription	Aorta	Aorta
33	chr3:43407600-43410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:43407800-43409800	Enhancers	Fetal Muscle Leg	muscle
35	chr3:43407800-43410800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:43407800-43411600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:43408000-43410200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:43408000-43412400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:43408000-43413600	Weak transcription	Brain Germinal Matrix	brain
40	chr3:43408000-43413800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:43408000-43414600	Weak transcription	Brain Anterior Caudate	brain
42	chr3:43408000-43415000	Weak transcription	Fetal Brain Female	brain
43	chr3:43408200-43409200	Enhancers	Gastric	stomach
44	chr3:43408200-43410000	Enhancers	Fetal Muscle Trunk	muscle
45	chr3:43408200-43410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:43408200-43411000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr3:43408200-43413800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:43408200-43414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:43408200-43414400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:43408200-43419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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