Variant report

Variant	rs4683165
Chromosome Location	chr3:46087308-46087309
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46076336..46079102-chr3:46085343..46087574,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12053895	0.88[ASN][1000 genomes]
rs12330360	0.92[EUR][1000 genomes]
rs12485445	0.88[ASN][1000 genomes]
rs12629747	1.00[EUR][1000 genomes]
rs12636866	0.92[EUR][1000 genomes]
rs13064616	0.92[ASN][1000 genomes]
rs13084541	0.82[ASN][1000 genomes]
rs1392288	0.91[ASN][1000 genomes]
rs1463680	0.81[ASN][1000 genomes]
rs1500003	0.91[ASN][1000 genomes]
rs1846615	0.91[ASN][1000 genomes]
rs1873001	0.91[ASN][1000 genomes]
rs2129879	0.92[ASN][1000 genomes]
rs2129881	0.92[ASN][1000 genomes]
rs2133660	0.91[ASN][1000 genomes]
rs2171528	0.92[ASN][1000 genomes]
rs2171529	0.92[ASN][1000 genomes]
rs2234350	0.81[ASN][1000 genomes]
rs2276855	0.96[ASN][1000 genomes]
rs2276856	0.82[ASN][1000 genomes]
rs2373089	0.88[ASN][1000 genomes]
rs2373090	0.88[ASN][1000 genomes]
rs35283688	0.88[ASN][1000 genomes]
rs3796374	0.91[ASN][1000 genomes]
rs3947589	0.91[ASN][1000 genomes]
rs4683179	0.92[EUR][1000 genomes]
rs55844314	0.91[ASN][1000 genomes]
rs57542549	0.82[ASN][1000 genomes]
rs57651127	0.96[ASN][1000 genomes]
rs57837898	0.96[ASN][1000 genomes]
rs7372175	0.92[EUR][1000 genomes]
rs751667	0.96[ASN][1000 genomes]
rs7612402	0.92[ASN][1000 genomes]
rs9812655	0.92[EUR][1000 genomes]
rs9817701	0.92[EUR][1000 genomes]
rs9844821	0.91[ASN][1000 genomes]
rs9869848	0.81[ASN][1000 genomes]
rs9875616	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46086400-46087400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:46086600-46088200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:46086600-46090000	Enhancers	Dnd41	blood
4	chr3:46086800-46089400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:46087000-46087400	Weak transcription	Fetal Thymus	thymus
6	chr3:46087000-46088800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:46087000-46088800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:46087000-46089200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:46087200-46088800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:46087200-46089200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:46087200-46089200	Enhancers	Primary T helper cells PMA-I stimulated	--

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