Variant report

Variant	rs4683634
Chromosome Location	chr3:141580483-141580484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2068229	0.94[CEU][hapmap];0.97[GIH][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs4683636	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4683637	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9850595	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141573000-141582000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141578000-141580600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:141578200-141580600	Enhancers	HepG2	liver
4	chr3:141578400-141581000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:141578600-141580800	Enhancers	HUVEC	blood vessel
6	chr3:141579000-141580600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:141579200-141580600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:141579200-141580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:141579400-141583200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:141579600-141580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:141579800-141582000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:141579800-141582000	Weak transcription	Left Ventricle	heart
13	chr3:141579800-141583800	Weak transcription	Lung	lung
14	chr3:141580000-141584000	Weak transcription	Right Ventricle	heart
15	chr3:141580200-141582400	Weak transcription	Adipose Nuclei	Adipose
16	chr3:141580400-141581800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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