Variant report

Variant	rs4687775
Chromosome Location	chr3:51769206-51769207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13090011	0.83[TSI][hapmap]
rs4687770	0.84[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4687771	0.83[CEU][hapmap]
rs6445958	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778196	0.80[EUR][1000 genomes]
rs9839297	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9839502	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9839728	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9876970	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4687775	TEX264	cis	Nerve Tibial	GTEx
rs4687775	MST1	cis	cerebellum	SCAN
rs4687775	HEMK1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51768200-51769400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:51768200-51769400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:51768200-51769400	Enhancers	Dnd41	blood
4	chr3:51768400-51769400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:51768600-51769400	Enhancers	Primary T cells from cord blood	blood
6	chr3:51769200-51769600	Enhancers	HepG2	liver
7	chr3:51769200-51770200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:51769200-51772400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:51769200-51773200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:51769200-51776400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:51769200-51776600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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