Variant report

Variant	rs4689589
Chromosome Location	chr4:7077428-7077429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000173013	Chromatin interaction
ENSG00000245748	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28866276	0.81[EUR][1000 genomes]
rs4689583	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4689584	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv4217	chr4:7035512-7080230	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7071000-7077800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:7071000-7078600	Weak transcription	Fetal Heart	heart
3	chr4:7071000-7086200	Weak transcription	Right Atrium	heart
4	chr4:7071400-7083200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:7073000-7077800	Weak transcription	Pancreas	Pancrea
6	chr4:7073200-7083000	Weak transcription	K562	blood
7	chr4:7075200-7078400	Enhancers	Placenta	Placenta
8	chr4:7075200-7079200	Enhancers	Fetal Muscle Leg	muscle
9	chr4:7075400-7078600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:7075400-7078800	Enhancers	Fetal Muscle Trunk	muscle
11	chr4:7075600-7079200	Enhancers	HSMMtube	muscle
12	chr4:7076200-7078800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:7076400-7077600	Weak transcription	Esophagus	oesophagus
14	chr4:7076600-7077600	Enhancers	HSMM	muscle
15	chr4:7076600-7077800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:7076600-7083600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:7077400-7077600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:7077400-7078000	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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