Variant report

Variant	rs4689670
Chromosome Location	chr4:7256475-7256476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62279424	0.81[EUR][1000 genomes]
rs6846285	0.83[ASN][1000 genomes]
rs7686843	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv829850	chr4:7112509-7314016	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878541	chr4:7211197-7341243	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv878542	chr4:7214696-7276541	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv461198	chr4:7219933-7265635	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv593565	chr4:7219933-7265635	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv4218	chr4:7225196-7270057	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
13	nsv461199	chr4:7253260-7270126	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv593566	chr4:7253260-7270126	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7252600-7261800	Weak transcription	Fetal Brain Female	brain
2	chr4:7252600-7262400	Weak transcription	Fetal Brain Male	brain
3	chr4:7252800-7256800	Weak transcription	HSMMtube	muscle
4	chr4:7252800-7257800	Weak transcription	Ovary	ovary
5	chr4:7253000-7257200	Weak transcription	Psoas Muscle	Psoas
6	chr4:7253000-7265400	Weak transcription	Brain Substantia Nigra	brain
7	chr4:7253400-7256600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:7253400-7258000	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:7253600-7256600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:7253600-7256600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:7253600-7258000	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:7253600-7258200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:7253600-7258400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:7253800-7256600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:7253800-7258200	Weak transcription	Brain Angular Gyrus	brain
16	chr4:7254000-7256800	Weak transcription	Esophagus	oesophagus
17	chr4:7254000-7259200	Weak transcription	Spleen	Spleen
18	chr4:7254200-7258200	Enhancers	Fetal Heart	heart
19	chr4:7254600-7256600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:7254600-7258200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:7254800-7258200	Weak transcription	Fetal Lung	lung
22	chr4:7255200-7262800	Weak transcription	Brain Germinal Matrix	brain
23	chr4:7255400-7257400	Enhancers	GM12878-XiMat	blood
24	chr4:7255400-7259000	Enhancers	HSMM	muscle
25	chr4:7255400-7259800	Enhancers	Fetal Muscle Leg	muscle
26	chr4:7255600-7256600	Weak transcription	Right Ventricle	heart
27	chr4:7255600-7256600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:7255600-7257800	Weak transcription	Right Atrium	heart
29	chr4:7255600-7258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:7256000-7257000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:7256200-7257000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:7256200-7257000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:7256200-7257600	Enhancers	Fetal Muscle Trunk	muscle
34	chr4:7256400-7257000	Enhancers	Fetal Thymus	thymus
35	chr4:7256400-7257400	Enhancers	Brain Anterior Caudate	brain
36	chr4:7256400-7259800	Enhancers	Left Ventricle	heart

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