Variant report

Variant	rs4690203
Chromosome Location	chr4:881228-881229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:881061-881752	HL-60	blood:	n/a	n/a
2	POLR2A	chr4:881194-881287	A549	lung:	n/a	n/a
3	POLR2A	chr4:880637-881822	GM12892	blood:	n/a	n/a
4	POLR2A	chr4:880641-881741	GM12891	blood:	n/a	n/a
5	MAX	chr4:881001-881801	NB4	blood:	n/a	chr4:881556-881566
6	STAT5A	chr4:877781-881768	K562	blood:	n/a	n/a
7	MYC	chr4:881189-881425	MCF-7	breast:	n/a	n/a
8	POU2F2	chr4:880632-881453	GM12891	blood:	n/a	n/a
9	POLR2A	chr4:880741-882107	GM19193	blood:	n/a	n/a
10	STAT5A	chr4:879815-881804	GM12878	blood:	n/a	n/a
11	POLR2A	chr4:881101-881637	K562	blood:	n/a	n/a
12	POLR2A	chr4:881110-881400	H1-hESC	embryonic stem cell:	n/a	n/a
13	TCF3	chr4:880574-881675	GM12878	blood:	n/a	n/a
14	POLR2A	chr4:880980-881517	MCF-7	breast:	n/a	n/a
15	POLR2A	chr4:881222-881808	K562	blood:	n/a	n/a
16	POLR2A	chr4:880758-881481	GM18951	blood:	n/a	n/a
17	BCL3	chr4:880639-881818	GM12878	blood:	n/a	n/a
18	BCL3	chr4:880567-881666	GM12878	blood:	n/a	n/a
19	PBX3	chr4:880692-881618	GM12878	blood:	n/a	n/a
20	POLR2A	chr4:880702-881847	GM12878	blood:	n/a	n/a
21	POLR2A	chr4:880635-881826	GM12891	blood:	n/a	n/a
22	NFATC1	chr4:880573-881798	GM12878	blood:	n/a	n/a
23	POU2F2	chr4:880530-881452	GM12891	blood:	n/a	n/a
24	STAT5A	chr4:880512-881663	GM12878	blood:	n/a	n/a
25	NR2C2	chr4:881107-881768	GM12878	blood:	n/a	n/a
26	TCF3	chr4:881171-881435	GM12878	blood:	n/a	n/a
27	MYC	chr4:881083-881246	MCF-7	breast:	n/a	n/a
28	POLR2A	chr4:880662-881898	GM12892	blood:	n/a	n/a
29	POLR2A	chr4:881113-881307	MCF-7	breast:	n/a	n/a
30	POLR2A	chr4:879557-881937	K562	blood:	n/a	n/a
31	NFATC1	chr4:880579-881631	GM12878	blood:	n/a	n/a
32	POLR2A	chr4:880927-881532	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr4:880555-881962	GM12878	blood:	n/a	n/a
34	POLR2A	chr4:880469-881927	GM12892	blood:	n/a	n/a
35	POLR2A	chr4:880684-881820	GM12878	blood:	n/a	n/a
36	POLR2A	chr4:881043-881245	K562	blood:	n/a	n/a
37	POLR2A	chr4:881162-881598	ProgFib	skin:	n/a	n/a
38	POLR2A	chr4:880630-881866	GM12891	blood:	n/a	n/a
39	POLR2A	chr4:880942-881811	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:880580..882887-chr4:979285..982250,2	K562	blood:
2	chr4:868569..870072-chr4:881118..883830,2	K562	blood:
3	chr4:877520..879506-chr4:881075..883252,2	K562	blood:
4	chr4:881197..883636-chr4:883859..886779,2	MCF-7	breast:
5	chr4:880377..884197-chr4:884613..886808,4	K562	blood:
6	chr4:880176..881824-chr4:882091..883725,2	K562	blood:
7	chr4:866046..868900-chr4:880612..882674,2	MCF-7	breast:

No data

Variant related genes	Relation type
GAK	TF binding region
ENSG00000178950	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000145214	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12509561	0.85[EUR][1000 genomes]
rs17165087	0.85[EUR][1000 genomes]
rs17165130	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2061846	0.82[EUR][1000 genomes]
rs2279175	0.86[EUR][1000 genomes]
rs2306244	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2335172	0.86[EUR][1000 genomes]
rs3733353	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3736087	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3775119	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775127	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775129	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs45486093	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690202	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690204	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4690336	0.90[EUR][1000 genomes]
rs4690339	0.86[EUR][1000 genomes]
rs4690340	0.85[EUR][1000 genomes]
rs56080039	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56223707	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56253935	0.86[EUR][1000 genomes]
rs56307842	0.86[EUR][1000 genomes]
rs56785826	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58429160	0.82[EUR][1000 genomes]
rs60492656	0.80[EUR][1000 genomes]
rs73207790	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73207791	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7684266	0.86[EUR][1000 genomes]
rs9328759	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9328760	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005224	chr4:507005-900281	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv536976	chr4:507005-900281	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
4	esv2757916	chr4:603208-931354	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv2759217	chr4:603208-931354	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv878247	chr4:607202-925149	Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
8	esv1829397	chr4:655939-1041957	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv878254	chr4:708932-899143	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv878255	chr4:708932-1052488	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv878258	chr4:712222-1058358	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv878260	chr4:713920-1052488	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
13	nsv878261	chr4:756686-1047794	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv1003219	chr4:769894-1105464	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
15	nsv878263	chr4:771587-1047794	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
16	nsv432547	chr4:782301-1053930	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	nsv878264	chr4:790757-1047794	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	nsv878265	chr4:793929-1024752	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
19	nsv878266	chr4:793929-1058358	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	nsv878268	chr4:795890-925149	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
21	nsv878269	chr4:795890-1024752	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
22	nsv878270	chr4:798962-1024752	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
23	esv1814222	chr4:809593-883039	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	nsv469998	chr4:809593-1087531	Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
25	nsv878272	chr4:809787-1058358	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
26	nsv878273	chr4:813393-888937	Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
27	nsv878274	chr4:813393-891098	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
28	nsv878275	chr4:813393-925149	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
29	nsv1008352	chr4:813393-1035416	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
30	nsv878276	chr4:813393-1047794	Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
31	nsv878277	chr4:813393-1087531	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
32	nsv1012895	chr4:827866-1054874	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
33	nsv536979	chr4:827866-1054874	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
34	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
35	nsv878279	chr4:828148-891098	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
36	nsv878280	chr4:828148-1052488	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
37	nsv878281	chr4:830601-925149	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
38	esv3414154	chr4:837025-978620	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
39	nsv998496	chr4:837273-964391	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
40	nsv1010196	chr4:851357-942660	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	esv29984	chr4:851357-964359	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv878282	chr4:854712-925149	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
43	nsv878283	chr4:862156-1052488	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
44	nsv878284	chr4:867866-925149	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
45	nsv1009970	chr4:876397-968985	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
46	nsv536981	chr4:876397-968985	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
47	esv3420211	chr4:878752-883750	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
48	esv3418584	chr4:879252-882850	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:841200-898600	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:841200-898800	Strong transcription	Placenta	Placenta
3	chr4:841200-901400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:841200-906000	Strong transcription	Stomach Smooth Muscle	stomach
5	chr4:841400-884400	Strong transcription	Brain Hippocampus Middle	brain
6	chr4:841400-892000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:841400-907400	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:842000-907400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:842200-907600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:844200-907600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr4:847200-920000	Weak transcription	Right Atrium	heart
12	chr4:848200-884600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:849800-885000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:849800-892200	Strong transcription	Colonic Mucosa	Colon
15	chr4:850200-884200	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:850200-892000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr4:850400-896200	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:850600-892400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:853400-891000	Weak transcription	Stomach Mucosa	stomach
20	chr4:853800-899400	Strong transcription	Dnd41	blood
21	chr4:856800-895600	Strong transcription	Fetal Brain Female	brain
22	chr4:857200-900200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:857400-884600	Strong transcription	Liver	Liver
24	chr4:857400-885400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:857400-899200	Strong transcription	Fetal Intestine Small	intestine
26	chr4:857400-906000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:857400-909600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:858000-907400	Strong transcription	Fetal Stomach	stomach
29	chr4:858200-884400	Strong transcription	Aorta	Aorta
30	chr4:861200-881400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:861400-881800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:861600-899200	Strong transcription	Fetal Intestine Large	intestine
33	chr4:861800-907400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:863000-881600	Strong transcription	Spleen	Spleen
35	chr4:864000-881400	Weak transcription	Hela-S3	cervix
36	chr4:864000-884600	Strong transcription	Brain Anterior Caudate	brain
37	chr4:864000-892000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:864000-898600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:864400-895800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:865600-895800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr4:865800-883800	Strong transcription	Rectal Smooth Muscle	rectum
42	chr4:866000-883600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:866200-885000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr4:867600-895800	Strong transcription	Adipose Nuclei	Adipose
45	chr4:868800-899400	Strong transcription	Fetal Muscle Leg	muscle
46	chr4:869000-884600	Strong transcription	Brain Cingulate Gyrus	brain
47	chr4:869800-884600	Strong transcription	Brain Angular Gyrus	brain
48	chr4:870000-892000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:870800-901400	Weak transcription	HUVEC	blood vessel
50	chr4:872200-890400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links