Variant report
| Variant | rs4692292 |
|---|---|
| Chromosome Location | chr4:28214753-28214754 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10020139 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10212872 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1032595 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12500090 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12503152 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12640748 | 0.88[EUR][1000 genomes] |
| rs12646224 | 0.88[EUR][1000 genomes] |
| rs12651626 | 0.88[EUR][1000 genomes] |
| rs1353651 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1497692 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1497718 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2173280 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28374480 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28584770 | 0.82[AFR][1000 genomes] |
| rs4692293 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4692299 | 0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs60495233 | 0.88[EUR][1000 genomes] |
| rs73221811 | 0.88[EUR][1000 genomes] |
| rs7659324 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9998286 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002855 | chr4:28141588-28240495 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv878774 | chr4:28153349-28254938 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1005382 | chr4:28157180-28403800 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv878775 | chr4:28163856-28473048 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1000514 | chr4:28192982-28445194 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 6 | nsv878776 | chr4:28208093-28267024 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv878777 | chr4:28208093-28343903 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28213800-28215000 | Weak transcription | Placenta Amnion | Placenta Amnion |
