Variant report

Variant	rs4692616
Chromosome Location	chr4:171561200-171561201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28548376	1.00[ASN][1000 genomes]
rs28715548	1.00[ASN][1000 genomes]
rs375454	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs390460	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs394642	0.89[AMR][1000 genomes]
rs401334	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs435684	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs435979	0.89[AMR][1000 genomes]
rs450510	0.89[AMR][1000 genomes]
rs4692614	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684583	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830151	chr4:171423566-171577867	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171560600-171561200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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