Variant report

Variant	rs4694548
Chromosome Location	chr4:73681946-73681947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004087	0.86[ASN][1000 genomes]
rs10021333	0.91[ASN][1000 genomes]
rs10155153	0.88[ASN][1000 genomes]
rs11939560	0.95[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12647893	0.89[ASN][1000 genomes]
rs13103819	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13129078	0.92[ASN][1000 genomes]
rs13129666	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13143720	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1582753	0.86[ASN][1000 genomes]
rs1599448	0.86[ASN][1000 genomes]
rs167561	0.88[ASN][1000 genomes]
rs16848812	0.91[ASN][1000 genomes]
rs190095	0.81[ASN][1000 genomes]
rs192876	0.89[ASN][1000 genomes]
rs2126207	0.88[ASN][1000 genomes]
rs221594	0.89[ASN][1000 genomes]
rs2219625	0.89[ASN][1000 genomes]
rs2614299	0.88[ASN][1000 genomes]
rs315316	0.88[ASN][1000 genomes]
rs315326	0.93[ASN][1000 genomes]
rs315329	0.87[ASN][1000 genomes]
rs315333	0.89[ASN][1000 genomes]
rs315334	0.89[ASN][1000 genomes]
rs315341	0.88[ASN][1000 genomes]
rs315363	0.86[ASN][1000 genomes]
rs315368	0.86[ASN][1000 genomes]
rs315374	0.85[ASN][1000 genomes]
rs35038748	0.91[ASN][1000 genomes]
rs35784055	0.93[ASN][1000 genomes]
rs4694143	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4694144	0.86[ASN][1000 genomes]
rs4694549	0.93[ASN][1000 genomes]
rs4694557	0.86[ASN][1000 genomes]
rs4694574	0.91[ASN][1000 genomes]
rs4694576	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4694577	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs56334611	0.90[ASN][1000 genomes]
rs922254	0.93[ASN][1000 genomes]
rs922255	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4694548	RASSF6	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73681000-73684000	Enhancers	Osteobl	bone
2	chr4:73681200-73686600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:73681600-73682600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links