Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10011670	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs10025289	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10033700	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs11937186	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1368642	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs1433477	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1433483	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433484	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1433485	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433486	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433487	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17513440	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1978738	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs28684660	0.97[ASN][1000 genomes]
rs28713553	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28755915	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4697207	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448022	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6814506	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6826894	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs730349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv4264	chr4:21138131-21199262	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1010273	chr4:21160249-21177683	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757042	chr4:21172465-21180995	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2759230	chr4:21172465-21180995	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21175200-21175800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:21175200-21176000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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