Variant report
| Variant | rs4697125 |
|---|---|
| Chromosome Location | chr4:19453277-19453278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10028364 | 0.93[ASN][1000 genomes] |
| rs12504527 | 0.83[ASN][1000 genomes] |
| rs1388147 | 0.82[ASN][1000 genomes] |
| rs1466668 | 0.81[ASN][1000 genomes] |
| rs1490881 | 0.83[ASN][1000 genomes] |
| rs1490886 | 0.83[ASN][1000 genomes] |
| rs1552659 | 0.81[ASN][1000 genomes] |
| rs1602393 | 0.83[ASN][1000 genomes] |
| rs1907216 | 0.82[ASN][1000 genomes] |
| rs2035775 | 0.83[ASN][1000 genomes] |
| rs2322090 | 0.81[ASN][1000 genomes] |
| rs2322091 | 0.81[ASN][1000 genomes] |
| rs4507357 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4586930 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4697629 | 0.82[ASN][1000 genomes] |
| rs4697634 | 0.81[ASN][1000 genomes] |
| rs6447901 | 0.83[ASN][1000 genomes] |
| rs6447908 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6845940 | 0.83[ASN][1000 genomes] |
| rs7662347 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19451000-19455000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
