Variant report

Variant	rs4697205
Chromosome Location	chr4:21124529-21124530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11929857	0.83[AFR][1000 genomes]
rs11932046	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11939115	0.83[CHB][hapmap];0.85[LWK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs1319225	0.86[JPT][hapmap]
rs1368643	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1368649	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1433482	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1433496	0.87[CHB][hapmap]
rs1560787	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs1812828	0.85[JPT][hapmap]
rs1821330	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1836087	0.86[JPT][hapmap]
rs1897666	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1897667	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs1978739	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs2060326	0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs2322846	0.81[YRI][hapmap]
rs2322870	0.85[JPT][hapmap]
rs2322873	0.86[JPT][hapmap]
rs4263402	0.84[JPT][hapmap]
rs4296672	0.81[CHB][hapmap];0.85[YRI][hapmap]
rs4697206	0.88[ASN][1000 genomes]
rs6448017	0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs6448023	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6448027	0.86[JPT][hapmap]
rs6819921	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6821250	0.86[JPT][hapmap]
rs6854413	0.86[JPT][hapmap]
rs719618	0.80[CHB][hapmap]
rs7658047	0.86[JPT][hapmap]
rs7668004	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs7687191	0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs7689062	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs892314	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4697205	LCORL	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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