Variant report

Variant	rs4698132
Chromosome Location	chr4:15997724-15997725
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10003313	0.83[EUR][1000 genomes]
rs11726546	1.00[CEU][hapmap]
rs16892760	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs16892764	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs2058146	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2058147	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2240683	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2240684	1.00[CEU][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2302167	0.83[EUR][1000 genomes]
rs2677778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28421727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698437	0.94[AMR][1000 genomes]
rs6449212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9991714	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv461281	chr4:15984033-16001378	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv593770	chr4:15984033-16001378	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15964600-16031000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:15968000-16002600	Weak transcription	Left Ventricle	heart
3	chr4:15969600-16011600	Weak transcription	Fetal Lung	lung
4	chr4:15971000-16008000	Weak transcription	Aorta	Aorta
5	chr4:15976800-16002600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:15977000-16007400	Weak transcription	Gastric	stomach
7	chr4:15978200-16003200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:15978800-16002800	Weak transcription	Right Ventricle	heart
9	chr4:15979400-16000400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:15979600-15998800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:15982200-16008200	Weak transcription	Brain Germinal Matrix	brain
12	chr4:15982800-16000200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:15983200-16000000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:15983400-15999800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:15987000-16003000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:15988400-16033800	Weak transcription	Pancreas	Pancrea
17	chr4:15989000-16008000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:15989000-16014400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:15989000-16024200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:15989800-16002200	Strong transcription	Fetal Stomach	stomach
21	chr4:15990000-16015200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:15991000-16029000	Weak transcription	Stomach Mucosa	stomach
23	chr4:15992400-16003200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:15992800-16002600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:15992800-16024800	Weak transcription	Fetal Intestine Small	intestine
26	chr4:15993000-16002600	Weak transcription	Fetal Brain Female	brain
27	chr4:15993800-16002600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:15994400-15999800	Strong transcription	Fetal Muscle Leg	muscle
29	chr4:15994600-16002400	Strong transcription	Primary hematopoietic stem cells	blood
30	chr4:15994800-15999800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr4:15994800-16007200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:15995000-16003200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:15995000-16003200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:15995000-16003200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:15995400-16007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:15995400-16007800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:15995600-15998400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:15995600-16003000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr4:15996600-15998400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:15996800-16001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:15996800-16001600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:15996800-16007400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:15996800-16008000	Weak transcription	Colonic Mucosa	Colon
44	chr4:15997000-15998400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:15997000-15998400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:15997000-16002800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:15997000-16006800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links